M01:- Medical Report Summarization

              Extraction of structured data from Medical Report

In this blog, we will see how  we can actually extract the medical field data from the given medical report.
In the era of digital healthcare, the ability to efficiently extract and analyze medical data is important.
Whether its for research, diagnosis or patient care having structured access to medical information can 
significantly enhance decision-making processes.

Setup for the environment

Before extraction process , we will ensure we will have necessary tools and libraries installed.
-> We will use google colab for the working environment.
 

    
-> Then after this process we will install the necessary tool and libraries for our work.
   

    Data Extraction Process
-> After this task we will start by defining a function to extract patient data from Pdfs.This function will
     utilize OCR to convert to scanned text into machine readable format.
   

Importing Google Gen AI
Then after this process, we will import google generativeai as genai .


Then we will design json schema for the further process to extract medical information with relevant 
attributes.


Implementation 
We will now implement the filling of json schema with extracted information.

We got this type of output in json format.
{'id': 'medical_report', 'description': 'Extracted medical information from a given report.', 'attributes': [{'id': 'test_date', 'description': 'The date of the medical test.', 'value': '03-Apr-2024'}, {'id': 'tsh_level', 'description': 'The TSH level measured in the test.', 'value': '21.215'}, {'id': 't3_level', 'description': 'The T3 level measured in the test.', 'value': '1.04'}, {'id': 't4_level', 'description': 'The T4 level measured in the test.', 'value': '8.30'}, {'id': 'free_t3_level', 'description': 'The free T3 level measured in the test.', 'value': None}, {'id': 'free_t4_level', 'description': 'The free T4 level measured in the test.', 'value': None}, {'id': 'tpoab_level', 'description': 'The TPOAb level measured in the test.', 'value': None}, {'id': 'tgab_level', 'description': 'The TGAb level measured in the test.', 'value': None}, {'id': 'interpretation', 'description': 'The interpretation of the test results.', 'value': None}, {'id': 'recommendations', 'description': 'Recommendations based on the test results.', 'value': None}, {'id': 'additional_notes', 'description': 'Any additional notes provided in the report.', 'value': None}]}


Conclusion
Automating the extraction of medical report data into structured format opens up numerous possibilities
for analysis and decision making process in health care. 

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